Junbo (Jacob) Shen

CS '24 St. Louis, MO

Projects

surgVAE

surgVAE

Generative multi-task model for cardiac surgery outcome prediction.

Healthcare
Generative Models
EHR

Slide-level Pretraining

Slide-level Pretraining

Slide-level Pretraining

Slide-level pretraining for pathology whole-slide image foundation models.

Pathology
Self-Supervised
Foundation Models

Spectrum Reconstruction (Noise-Robust)

Spectrum Reconstruction (Noise-Robust)

Spectrum Reconstruction (Noise-Robust)

Noise-robust optical conv2seq modeling for broadband spectrum reconstruction.

Optics
Sequence Models
Robustness

GenomeDrugFM-AMR

GenomeDrugFM-AMR

GenomeDrugFM-AMR

Genome–drug paired foundation model for antimicrobial resistance prediction.

Genomics LM
Multi-modal
AMR

USPNet

USPNet

Unbiased organism-agnostic signal peptide prediction with protein language models.

Protein LM
Bioinformatics
Deep Learning

AMP-Agent

AMP-Agent

LLM-based multi-agent system for antimicrobial peptide discovery.

Agents
LLMs
Bioinformatics

DeepSAD

DeepSAD

Predicts synergy effects of antibacterial drug combinations.

Drug Discovery
Multi-modal
ML

Tools

Codex Research Brainstorm

Codex Research Brainstorm

Codex Research Brainstorm

Repurposing Codex as a Research Idea Discovery and Brainstorming Agent.

Agent
Tooling
Research

Contact

For potential research collaborations, please email me or message me here: